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IEEE Transactions on Computational Biology and Bioinformatics|August 14, 2025
The structure of deviations from maximum parsimony for densely-sampled data and applications for clade support estimationWilliam Howard-Snyder, Will Dumm, Mary Barker, et al.
Biorxiv : the Preprint Server for Biology|December 23, 2024
HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator XGuy Baele, Luiz M Carvalho, Marius Brusselmans, et al.
BMC Bioinformatics|May 29, 2021
A phylogenetic approach for weighting genetic sequencesNicola De Maio, Alexander V Alekseyenko, William J Coleman-Smith, et al.
Harvard Data Science Review|December 28, 2020
How Confident Are We about Observational Findings in Healthcare: A Benchmark StudyMartijn J Schuemie, M Soledad Cepeda, Marc A Suchard, et al.
AIDS (London, England)|September 11, 2015
Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individualsRaf Winand, Kristof Theys, Mónica Eusébio, et al.
Proceedings of the National Academy of Sciences of the United States of America|November 15, 2024
Modeling the velocity of evolving lineages and predicting dispersal patternsPaul Bastide, Pauline Rocu, Johannes Wirtz, et al.
Epidemics|November 22, 2020
Pseudo-likelihood based logistic regression for estimating COVID-19 infection and case fatality rates by gender, race, and age in CaliforniaDi Xiong, Lu Zhang, Gregory L Watson, et al.
BMJ Open|June 9, 2022
Large-scale evidence generation and evaluation across a network of databases for type 2 diabetes mellitus (LEGEND-T2DM): a protocol for a series of multinational, real-world comparative cardiovascular effectiveness and safety studiesRohan Khera, Martijn J Schuemie, Yuan Lu, et al.
Biorxiv : the Preprint Server for Biology|June 19, 2024
Modeling the velocity of evolving lineages and predicting dispersal patternsPaul Bastide, Pauline Rocu, Johannes Wirtz, et al.
Medrxiv : the Preprint Server for Health Sciences|June 17, 2024
spread.gl: visualising pathogen dispersal in a high-performance browser applicationYimin Li, Nena Bollen, Samuel L Hong, et al.
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