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Bioinformatics (Oxford, England)|July 14, 2020
Hopper: a mathematically optimal algorithm for sketching biological dataBenjamin DeMeo, Bonnie BergerGenome Biology|August 25, 2023
SCA: recovering single-cell heterogeneity through information-based dimensionality reductionBenjamin DeMeo, Bonnie BergerProceedings of Machine Learning Research|August 25, 2020
Large-Margin Classification in Hyperbolic SpaceHyunghoon Cho, Benjamin DeMeo, Jian Peng, et al.Cell Systems|June 10, 2019
Geometric Sketching Compactly Summarizes the Single-Cell Transcriptomic LandscapeBrian Hie, Hyunghoon Cho, Benjamin DeMeo, et al.Genome Biology|July 3, 2019
Emerging technologies towards enhancing privacy in genomic data sharingBonnie Berger, Hyunghoon ChoProceedings. IEEE Symposium on Security and Privacy. Workshops|December 5, 2017
One Size Doesn't Fit All: Measuring Individual Privacy in Aggregate Genomic DataSean Simmons, Bonnie Berger... International Conference on Learning Representations|March 2, 2026
Learning protein sequence embeddings using information from structureTristan Bepler, Bonnie BergerBioinformatics (Oxford, England)|January 16, 2016
Realizing privacy preserving genome-wide association studiesSean Simmons, Bonnie BergerJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 30, 2015
Efficient Design of Compact Unstructured RNA Libraries Covering All k-mersYaron Orenstein, Bonnie BergerCell Systems|June 17, 2021
Learning the protein language: Evolution, structure, and functionTristan Bepler, Bonnie BergerPageof 24