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Nature Reviews. Genetics|December 8, 2022
Navigating bottlenecks and trade-offs in genomic data analysisBonnie Berger, Yun William YuProceedings of the National Academy of Sciences of the United States of America|February 27, 2026
Profile of David Baker, Demis Hassabis, and John Jumper: 2024 Nobel laureates in chemistryBonnie Berger, David S EisenbergCell Systems|July 26, 2016
Enabling Privacy-Preserving GWASs in Heterogeneous Human PopulationsSean Simmons, Cenk Sahinalp, Bonnie BergerPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|April 10, 2019
Protecting Genomic Data Privacy with Probabilistic ModelingSean Simmons, Bonnie Berger, Cenk SahinalpBioinformatics (Oxford, England)|August 20, 2008
Optimal contact map alignment of protein-protein interfacesVinay Pulim, Bonnie Berger, Jadwiga BienkowskaCell Systems|November 28, 2016
Compact Integration of Multi-Network Topology for Functional Analysis of GenesHyunghoon Cho, Bonnie Berger, Jian PengArxiv|September 15, 2025
Learning residue level protein dynamics with multiscale GaussiansMihir Bafna, Bowen Jing, Bonnie BergerBioinformatics (Oxford, England)|June 17, 2016
RCK: accurate and efficient inference of sequence- and structure-based protein-RNA binding models from RNAcompete dataYaron Orenstein, Yuhao Wang, Bonnie BergerPlos Computational Biology|January 16, 2008
Matt: local flexibility aids protein multiple structure alignmentMatthew Menke, Bonnie Berger, Lenore CowenAlgorithms for Molecular Biology : AMB|April 21, 2011
Sparse estimation for structural variabilityRaghavendra Hosur, Rohit Singh, Bonnie BergerPageof 24