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Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|January 31, 2008
Global alignment of multiple protein interaction networksRohit Singh, Jinbo Xu, Bonnie BergerCurrent Opinion in Structural Biology|April 3, 2026
AI-based methods for simulating, sampling, and predicting protein ensemblesBowen Jing, Bonnie Berger, Tommi JaakkolaArxiv|December 18, 2023
Equivariant Scalar Fields for Molecular Docking with Fast Fourier TransformsBowen Jing, Tommi Jaakkola, Bonnie BergerBiorxiv : the Preprint Server for Biology|April 16, 2025
Tracing the Shared Foundations of Gene Expression and Chromatin StructureHuan Liang, Bonnie Berger, Rohit SinghGenome Research|January 9, 2013
Structure-based whole-genome realignment reveals many novel noncoding RNAsSebastian Will, Michael Yu, Bonnie BergerBMC Genomics|February 22, 2018
Finding RNA structure in the unstructured RBPomeYaron Orenstein, Uwe Ohler, Bonnie BergerProtein Science : a Publication of the Protein Society|December 22, 2007
LTHREADER: prediction of extracellular ligand-receptor interactions in cytokines using localized threadingVinay Pulim, Jadwiga Bienkowska, Bonnie BergerPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|November 10, 2007
LTHREADER: prediction of ligand-receptor interactions using localized threadingVinay Pulim, Jadwiga Bienkowska, Bonnie BergerJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 9, 2007
A parameterized algorithm for protein structure alignmentJinbo Xu, Feng Jiao, Bonnie BergerPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|November 11, 2006
Struct2net: integrating structure into protein-protein interaction predictionRohit Singh, Jinbo Xu, Bonnie BergerPageof 24