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Proceedings of the National Academy of Sciences of the United States of America|August 30, 2008
Global alignment of multiple protein interaction networks with application to functional orthology detectionRohit Singh, Jinbo Xu, Bonnie BergerCell Systems|September 15, 2021
Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computerBarış Ekim, Bonnie Berger, Rayan ChikhiResearch in Computational Molecular Biology : ... Annual International Conference, RECOMB ... : Proceedings. RECOMB (Conference : 2005- )|June 5, 2024
A Randomized Parallel Algorithm for Efficiently Finding Near-Optimal Universal Hitting SetsBarış Ekim, Bonnie Berger, Yaron OrensteinGenome Biology|February 26, 2020
Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing readsSumaiya Nazeen, Yun William Yu, Bonnie BergerF1000Research|July 18, 2017
2017 ISCB Innovator Award: Aviv RegevChristiana N Fogg, Diane Kovats, Bonnie Berger... International Conference on Learning Representations|March 2, 2026
Granger causal inference on DAGs identifies genomic loci regulating transcriptionRohit Singh, Alexander P Wu, Bonnie BergerPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|November 13, 2009
Local optimization for global alignment of protein interaction networksLeonid Chindelevitch, Chung-Shou Liao, Bonnie BergerCell Systems|October 16, 2020
Leveraging Uncertainty in Machine Learning Accelerates Biological Discovery and DesignBrian Hie, Bryan D Bryson, Bonnie BergerGenetics|May 3, 2014
Improving the power of GWAS and avoiding confounding from population stratification with PC-SelectGeorge Tucker, Alkes L Price, Bonnie BergerPlos One|January 5, 2012
Phenotype prediction using regularized regression on genetic data in the DREAM5 Systems Genetics B ChallengePo-Ru Loh, George Tucker, Bonnie BergerPageof 24