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Science (New York, N.Y.)|January 15, 2021
Learning the language of viral evolution and escapeBrian Hie, Ellen D Zhong, Bonnie Berger, et al.Nucleic Acids Research|July 18, 2006
transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrelsJ Waldispühl, Bonnie Berger, Peter Clote, et al.Nature Communications|October 16, 2020
Topaz-Denoise: general deep denoising models for cryoEM and cryoETTristan Bepler, Kotaro Kelley, Alex J Noble, et al.Bioinformatics (Oxford, England)|October 11, 2025
Memory-efficient, accelerated protein interaction inference with blocked, multi-GPU D-SCRIPTDaniel E Schäffer, Samuel Sledzieski, Lenore Cowen, et al.Genome Biology|May 4, 2021
Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalitiesRohit Singh, Brian L Hie, Ashwin Narayan, et al.Plos One|September 9, 2011
Multicoil2: predicting coiled coils and their oligomerization states from sequence in the twilight zoneJason Trigg, Karl Gutwin, Amy E Keating, et al.Bioinformatics (Oxford, England)|July 12, 2021
Bayesian information sharing enhances detection of regulatory associations in rare cell typesAlexander P Wu, Jian Peng, Bonnie Berger, et al.Journal of Sport & Exercise Psychology|December 20, 2007
Exercise makes you feel good, but does feeling good make you exercise?: an examination of obese dietersRobert A Carels, Carissa Coit, Kathleen Young, et al.Proteins|July 22, 2006
Predicting transmembrane beta-barrels and interstrand residue interactions from sequenceJ Waldispühl, Bonnie Berger, Peter Clote, et al.Bioinformatics (Oxford, England)|September 3, 2016
Fast genotyping of known SNPs through approximate k-mer matchingAriya Shajii, Deniz Yorukoglu, Yun William Yu, et al.Pageof 24