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Biorxiv : the Preprint Server for Biology|July 3, 2026
Intrinsic promoter responsiveness dictates sensitivity to transcriptional activation by enhancersYingxuan Tan, Judhajeet Ray, Maya U Sheth, et al.Biorxiv : the Preprint Server for Biology|February 20, 2025
Thermodynamic principles link in vitro transcription factor affinities to single-molecule chromatin states in cellsJulia M Schaepe, Torbjörn Fries, Benjamin R Doughty, et al.Cell|November 27, 2025
Thermodynamic principles link in vitro transcription factor affinities to single-molecule chromatin states in cellsJulia M Schaepe, Torbjörn Fries, Benjamin R Doughty, et al.Biorxiv : the Preprint Server for Biology|October 24, 2023
Single-cell chromatin state transitions during epigenetic memory formationTaihei Fujimori, Carolina Rios-Martinez, Abby R Thurm, et al.Science Advances|July 23, 2026
Single-cell chromatin state transitions during epigenetic memory formationTaihei Fujimori, Abby R Thurm, Simon Gaudin, et al.Nature|November 20, 2024
Single-molecule states link transcription factor binding to gene expressionBenjamin R Doughty, Michaela M Hinks, Julia M Schaepe, et al.Biorxiv : the Preprint Server for Biology|February 14, 2024
Single-molecule chromatin configurations link transcription factor binding to expression in human cellsBenjamin R Doughty, Michaela M Hinks, Julia M Schaepe, et al.Biorxiv : the Preprint Server for Biology|January 8, 2024
Rewriting regulatory DNA to dissect and reprogram gene expressionGabriella E Martyn, Michael T Montgomery, Hank Jones, et al.Proceedings of the National Academy of Sciences of the United States of America|December 30, 2020
HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probesJamie L Marshall, Benjamin R Doughty, Vidya Subramanian, et al.Cell|April 17, 2025
Rewriting regulatory DNA to dissect and reprogram gene expressionGabriella E Martyn, Michael T Montgomery, Hank Jones, et al.Pageof 2