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Bioinformatics (Oxford, England)|July 14, 2020
Combinatorial and statistical prediction of gene expression from haplotype sequenceBerk A Alpay, Pinar Demetci, Sorin Istrail, et al.Bioinformatics (Oxford, England)|July 2, 2013
Haplotype assembly in polyploid genomes and identical by descent shared tractsDerek Aguiar, Sorin IstrailJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 16, 2012
HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence dataDerek Aguiar, Sorin IstrailPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|December 2, 2010
Haplotype phasing by multi-assembly of shared haplotypes: phase-dependent interactions between rare variantsBjarni V Halldórsson, Derek Aguiar, Sorin IstrailPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|December 4, 2013
Tumor haplotype assembly algorithms for cancer genomicsDerek Aguiar, Wendy S W Wong, Sorin IstrailMethods in Molecular Biology (Clifton, N.J.)|September 10, 2010
Practical computational methods for regulatory genomics: a cisGRN-Lexicon and cisGRN-browser for gene regulatory networksSorin Istrail, Ryan Tarpine, Kyle Schutter, et al.Evodevo|June 5, 2013
A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systemsSarah Tulin, Derek Aguiar, Sorin Istrail, et al.Drug Discovery Today|September 17, 2022
Evaluating molecular fingerprint-based models of drug side effects against a statistical controlBerk A Alpay, Mark Gosink, Derek AguiarJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 10, 2011
The Clark phaseable sample size problem: long-range phasing and loss of heterozygosity in GWASBjarni V Halldórsson, Derek Aguiar, Ryan Tarpine, et al.Bioinformatics (Oxford, England)|June 13, 2012
DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autismDerek Aguiar, Bjarni V Halldórsson, Eric M Morrow, et al.Pageof 6