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Scientific Reports|April 29, 2020
Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencingMarie-Alice Fraiture, Bert Bogaerts, Raf Winand, et al.
Frontiers in Microbiology|November 19, 2021
Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning OutbreaksStéphanie Nouws, Bert Bogaerts, Bavo Verhaegen, et al.
Poultry Science|March 28, 2026
Fluoroquinolone resistance in Escherichia coli in the broiler production chain: the role of parent stock and hatcheryMoniek Ringenier, Bert Bogaerts, Filip Boyen, et al.
Frontiers in Veterinary Science|October 6, 2025
Mapping the spread of fluoroquinolone resistance: continued presence of non-susceptible Escherichia coli in broilersMoniek Ringenier, Filip Boyen, Bert Bogaerts, et al.
Scientific Reports|September 5, 2020
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolatesStéphanie Nouws, Bert Bogaerts, Bavo Verhaegen, et al.
International Journal of Molecular Sciences|January 8, 2020
TARGETING THE 16S RRNA GENE FOR BACTERIAL IDENTIFICATION IN COMPLEX MIXED SAMPLES: COMPARATIVE EVALUATION OF SECOND (ILLUMINA) AND THIRD (OXFORD NANOPORE TECHNOLOGIES) GENERATION SEQUENCING TECHNOLOGIESRaf Winand, Bert Bogaerts, Stefan Hoffman, et al.
Viruses|July 27, 2024
Phage-Mediated Digestive Decolonization in a Gut-On-A-Chip Model: A Tale of Gut-Specific Bacterial ProsperityBrieuc Van Nieuwenhuyse, Maya Merabishvili, Nathalie Goeders, et al.
Frontiers in Veterinary Science|October 7, 2024
Genomic comparison between Mycobacterium bovis and Mycobacterium microti and in silico analysis of peptide-based biomarkers for serodiagnosisCharlotte Moens, Bert Bogaerts, Victor Lorente-Leal, et al.
Frontiers in Microbiology|August 13, 2025
Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing: a case study on fluoroquinolone resistanceBram Bloemen, Mathieu Gand, Moniek Ringenier, et al.
Microorganisms|April 30, 2021
Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic CirculationBert Bogaerts, Raf Winand, Julien Van Braekel, et al.
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