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Frontiers in Microbiology|July 31, 2023
Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practicesStéphanie Nouws, Bavo Verhaegen, Sarah Denayer, et al.Emerging Infectious Diseases|March 19, 2020
Isolation of Drug-Resistant Gallibacterium anatis from Calves with Unresponsive Bronchopneumonia, BelgiumLaura Van Driessche, Kevin Vanneste, Bert Bogaerts, et al.Frontiers in Microbiology|July 7, 2023
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencingBert Bogaerts, Marie-Alice Fraiture, Astrid Huwaert, et al.International Journal of Food Microbiology|May 16, 2025
Whole-genome sequencing of soil- and foodborne Bacillus cereus sensu lato indicates no clear association between their virulence repertoire, genomic diversity and food matrixBram Jacobs, Bert Bogaerts, Marie Verhaegen, et al.Frontiers in Microbiology|March 22, 2019
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-ConceptBert Bogaerts, Raf Winand, Qiang Fu, et al.Microorganisms|August 26, 2023
Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in BeninCarine Laurence Yehouenou, Bert Bogaerts, Kevin Vanneste, et al.Journal of Clinical Microbiology|August 22, 2025
Oxford Nanopore Technologies R10 sequencing enables accurate cgMLST-based bacterial outbreak investigation of Neisseria meningitidis and Salmonella enterica when accounting for methylation-related errorsBert Bogaerts, Margo Maex, Florian Commans, et al.BMC Genomics|August 7, 2025
Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databasesRaf Winand, Elizabet D'hooge, Alexander Van Uffelen, et al.Acta Clinica Belgica|November 9, 2021
Retrospective evaluation of routine whole genome sequencing of Mycobacterium tuberculosis at the Belgian National Reference Center, 2019Karine Soetaert, Pieter-Jan Ceyssens, Samira Boarbi, et al.Foods (Basel, Switzerland)|August 6, 2020
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller CountryStéphanie Nouws, Bert Bogaerts, Bavo Verhaegen, et al.Pageof 5