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Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America|November 6, 2023
Knowing and Naming: Phage Annotation and Nomenclature for Phage TherapySusanna R Grigson, Sarah K Giles, Robert A Edwards, et al.Environmental Microbiology Reports|April 19, 2017
The skin microbiome of the common thresher shark (Alopias vulpinus) has low taxonomic and gene function β-diversityMichael P Doane, John Matthew Haggerty, Dovi Kacev, et al.Bioinformatics Advances|May 25, 2026
<i>agtools</i>: a software framework to manipulate assembly graphsVijini Mallawaarachchi, George Bouras, Ryan R Wick, et al.Mbio|May 8, 2023
Host Association and Spatial Proximity Shape but Do Not Constrain Population Structure in the Mutualistic Symbiont Xenorhabdus bovieniiBhavya Papudeshi, Douglas B Rusch, David VanInsberghe, et al.Current Protocols|July 7, 2026
Decoding Viral Dark Matter: Metagenomic Prokaryotic Virus Characterization With Pharokka, Phold, and PhyntenyGeorge Bouras, Susanna R Grigson, Lindsay Durr, et al.Critical Reviews in Microbiology|September 21, 2025
Picobirnavirus: how do you find where it's hiding?Abbey L K Hutton, Susanna Grigson, Louise Bartle, et al.Microorganisms|May 28, 2022
The StkSR Two-Component System Influences Colistin Resistance in <i>Acinetobacter baumannii</i>Sarah K Giles, Uwe H Stroeher, Bhavya Papudeshi, et al.Environmental Geochemistry and Health|November 4, 2025
Metagenomics reveals water, biofilm, and sediment microbial communities exhibit distinct responses and functions in neutral and metalliferous drainage (NMD)Nicholas W Falk, Haylee Smith, Bhavya Papudeshi, et al.Microbial Ecology|August 14, 2022
Coral and Seawater Metagenomes Reveal Key Microbial Functions to Coral Health and Ecosystem Functioning Shaped at Reef ScaleLaís F O Lima, Amanda T Alker, Bhavya Papudeshi, et al.Biorxiv : the Preprint Server for Biology|May 3, 2023
The Promise and Pitfalls of ProphagesJody C McKerral, Bhavya Papudeshi, Laura K Inglis, et al.Pageof 3