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Biorxiv : the Preprint Server for Biology|April 17, 2023
Phables: from fragmented assemblies to high-quality bacteriophage genomesVijini Mallawaarachchi, Michael J Roach, Przemyslaw Decewicz, et al.
Bioinformatics (Oxford, England)|September 22, 2023
Phables: from fragmented assemblies to high-quality bacteriophage genomesVijini Mallawaarachchi, Michael J Roach, Przemyslaw Decewicz, et al.
Nucleic Acids Research|January 7, 2026
Protein structure-informed bacteriophage genome annotation with PholdGeorge Bouras, Susanna R Grigson, Milot Mirdita, et al.
Bioinformatics Advances|February 3, 2025
Sphae: an automated toolkit for predicting phage therapy candidates from sequencing dataBhavya Papudeshi, Michael J Roach, Vijini Mallawaarachchi, et al.
Biorxiv : the Preprint Server for Biology|November 28, 2024
phage therapy candidates from Sphae: An automated toolkit for predicting sequencing dataBhavya Papudeshi, Michael J Roach, Vijini Mallawaarachchi, et al.
Scientific Reports|August 7, 2023
Emergent community architecture despite distinct diversity in the global whale shark (Rhincodon typus) epidermal microbiomeMichael P Doane, Michael B Reed, Jody McKerral, et al.
Biorxiv : the Preprint Server for Biology|March 22, 2023
Host interactions of novel <i>Crassvirales</i> species belonging to multiple families infecting bacterial host, <i>Bacteroides cellulosilyticus</i> WH2Bhavya Papudeshi, Alejandro A Vega, Cole Souza, et al.
Microbial Genomics|September 4, 2023
Host interactions of novel <i>Crassvirales</i> species belonging to multiple families infecting bacterial host, <i>Bacteroides cellulosilyticus</i> WH2Bhavya Papudeshi, Alejandro A Vega, Cole Souza, et al.
Microbiome|June 15, 2020
The skin microbiome of elasmobranchs follows phylosymbiosis, but in teleost fishes, the microbiomes convergeMichael P Doane, Megan M Morris, Bhavya Papudeshi, et al.
Medrxiv : the Preprint Server for Health Sciences|January 8, 2026
Microbial Ecological Signatures Predict Pathogen Emergence and Multidrug Resistance in Cystic Fibrosis Airways up to a Year in AdvanceThomas R Goddard, Jessica Ap Carlson-Jones, Judith Morton, et al.
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