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BMC Bioinformatics|August 13, 2009
Accurate and fast methods to estimate the population mutation rate from error prone sequencesBjarne Knudsen, Michael M MiyamotoBMC Evolutionary Biology|March 4, 2005
Using equilibrium frequencies in models of sequence evolutionBjarne Knudsen, Michael M MiyamotoJournal of Molecular Biology|October 8, 2003
Sequence alignments and pair hidden Markov models using evolutionary historyBjarne Knudsen, Michael M MiyamotoGenetics|June 15, 2007
Incorporating experimental design and error into coalescent/mutation models of population historyBjarne Knudsen, Michael M MiyamotoGenes|April 9, 2014
A computer simulator for assessing different challenges and strategies of de novo sequence assemblyBjarne Knudsen, Roald Forsberg, Michael M MiyamotoGenetics|August 22, 2003
Using evolutionary rates to investigate protein functional divergence and conservation. A case study of the carbonic anhydrasesBjarne Knudsen, Michael M Miyamoto, Philip J Laipis, et al.Genetica|September 2, 2005
Functional divergence of the circadian clock proteins in prokaryotesVolodymyr Dvornyk, Bjarne KnudsenNucleic Acids Research|June 26, 2003
Pfold: RNA secondary structure prediction using stochastic context-free grammarsBjarne Knudsen, Jotun HeinMolecular Genetics and Metabolism|April 3, 2004
Evolutionary divergence of thyrotropin receptor structureBjarne Knudsen, Nadir R FaridNucleic Acids Research|January 10, 2003
tmRDB (tmRNA database)Christian Zwieb, Jan Gorodkin, Bjarne Knudsen, et al.Pageof 6