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Bioinformatics (Oxford, England)|September 27, 2016
LAMSA: fast split read alignment with long approximate matchesBo Liu, Yan Gao, Yadong WangBioinformatics (Oxford, England)|September 13, 2019
TideHunter: efficient and sensitive tandem repeat detection from noisy long-reads using seed-and-chainYan Gao, Bo Liu, Yadong Wang, et al.Bioinformatics (Oxford, England)|November 9, 2020
abPOA: an SIMD-based C library for fast partial order alignment using adaptive bandYan Gao, Yongzhuang Liu, Yanmei Ma, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|May 7, 2019
deGSM: Memory Scalable Construction Of Large Scale de Bruijn GraphHongzhe Guo, Yilei Fu, Yan Gao, et al.Frontiers in Cell and Developmental Biology|September 6, 2021
Psi-Caller: A Lightweight Short Read-Based Variant Caller With High Speed and AccuracyYadong Liu, Tao Jiang, Yan Gao, et al.Bioinformatics (Oxford, England)|June 17, 2016
deBWT: parallel construction of Burrows-Wheeler Transform for large collection of genomes with de Bruijn-branch encodingBo Liu, Dixian Zhu, Yadong WangBMC Bioinformatics|August 26, 2021
Fast and SNP-aware short read alignment with SALTWei Quan, Bo Liu, Yadong WangGigascience|February 17, 2025
xRead: a coverage-guided approach for scalable construction of read overlapping graphTangchao Kong, Yadong Wang, Bo LiuGenome Biology|August 5, 2020
Long-read-based human genomic structural variation detection with cuteSVTao Jiang, Yongzhuang Liu, Yue Jiang, et al.Bioinformatics (Oxford, England)|November 17, 2015
rHAT: fast alignment of noisy long reads with regional hashingBo Liu, Dengfeng Guan, Mingxiang Teng, et al.Pageof 1,321