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Nature Communications|April 18, 2023
PepQuery2 democratizes public MS proteomics data for rapid peptide searchingBo Wen, Bing Zhang
Genome Research|January 6, 2019
PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterationsBo Wen, Xiaojing Wang, Bing Zhang
Bioinformatics (Oxford, England)|October 22, 2022
OmicsEV: a tool for comprehensive quality evaluation of omics data tablesBo Wen, Eric J Jaehnig, Bing Zhang
Nature Communications|April 11, 2020
Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysisBo Wen, Kai Li, Yun Zhang, et al.
Molecular & Cellular Proteomics : MCP|April 22, 2021
Feature Selection Methods for Protein Biomarker Discovery from Proteomics or Multiomics DataZhiao Shi, Bo Wen, Qiang Gao, et al.
Proteomics|September 1, 2020
DeepRescore: Leveraging Deep Learning to Improve Peptide Identification in ImmunopeptidomicsKai Li, Antrix Jain, Anna Malovannaya, et al.
Bioinformatics (Oxford, England)|September 1, 2018
PDV: an integrative proteomics data viewerKai Li, Marc Vaudel, Bing Zhang, et al.
Iscience|October 8, 2021
caAtlas: An immunopeptidome atlas of human cancerXinpei Yi, Yuxing Liao, Bo Wen, et al.
Proteomics|September 17, 2020
Deep Learning in ProteomicsBo Wen, Wen-Feng Zeng, Yuxing Liao, et al.
BMC Bioinformatics|June 19, 2016
PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-SeqBo Wen, Shaohang Xu, Ruo Zhou, et al.
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