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Nature Communications|April 11, 2020
Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysisBo Wen, Kai Li, Yun Zhang, et al.Proteomics|September 1, 2020
DeepRescore: Leveraging Deep Learning to Improve Peptide Identification in ImmunopeptidomicsKai Li, Antrix Jain, Anna Malovannaya, et al.Bioinformatics (Oxford, England)|September 1, 2018
PDV: an integrative proteomics data viewerKai Li, Marc Vaudel, Bing Zhang, et al.Nature Communications|April 18, 2023
PepQuery2 democratizes public MS proteomics data for rapid peptide searchingBo Wen, Bing ZhangIscience|October 8, 2021
caAtlas: An immunopeptidome atlas of human cancerXinpei Yi, Yuxing Liao, Bo Wen, et al.Genome Research|January 6, 2019
PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterationsBo Wen, Xiaojing Wang, Bing ZhangMolecular & Cellular Proteomics : MCP|December 10, 2017
Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage SpecificityXiaojing Wang, Simona G Codreanu, Bo Wen, et al.Bioinformatics (Oxford, England)|October 22, 2022
OmicsEV: a tool for comprehensive quality evaluation of omics data tablesBo Wen, Eric J Jaehnig, Bing ZhangMolecular & Cellular Proteomics : MCP|April 22, 2021
Feature Selection Methods for Protein Biomarker Discovery from Proteomics or Multiomics DataZhiao Shi, Bo Wen, Qiang Gao, et al.Nature Methods|August 26, 2025
DeepMVP: deep learning models trained on high-quality data accurately predict PTM sites and variant-induced alterationsBo Wen, Chenwei Wang, Kai Li, et al.Pageof 1,895