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Molecular Biology and Evolution|June 5, 2003
Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNARasmus Nielsen, Ziheng YangPlos One|November 19, 2008
The trouble with sliding windows and the selective pressure in BRCA1Karl Schmid, Ziheng YangMolecular Biology and Evolution|January 8, 2008
Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usageZiheng Yang, Rasmus NielsenMolecular Biology and Evolution|October 3, 2014
Unguided species delimitation using DNA sequence data from multiple LociZiheng Yang, Bruce RannalaSystematic Biology|July 14, 2005
Branch-length prior influences Bayesian posterior probability of phylogenyZiheng Yang, Bruce RannalaProceedings of the National Academy of Sciences of the United States of America|February 13, 2018
Bayesian selection of misspecified models is overconfident and may cause spurious posterior probabilities for phylogenetic treesZiheng Yang, Tianqi ZhuMolecular Biology and Evolution|July 8, 2008
Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errorsRalph Burgess, Ziheng YangProceedings of the National Academy of Sciences of the United States of America|May 5, 2010
Bayesian species delimitation using multilocus sequence dataZiheng Yang, Bruce RannalaMolecular Biology and Evolution|May 8, 2010
The effect of insertions, deletions, and alignment errors on the branch-site test of positive selectionWilliam Fletcher, Ziheng YangSystematic Biology|May 1, 2013
Dating phylogenies with sequentially sampled tipsTanja Stadler, Ziheng YangPageof 399