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Nature Reviews. Genetics|March 30, 2012
Molecular phylogenetics: principles and practiceZiheng Yang, Bruce RannalaMolecular Biology and Evolution|April 17, 2012
Maximum likelihood implementation of an isolation-with-migration model with three species for testing speciation with gene flowTianqi Zhu, Ziheng YangMolecular Biology and Evolution|September 24, 2005
Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft boundsZiheng Yang, Bruce RannalaMolecular Ecology|March 11, 2017
Bayesian species identification under the multispecies coalescent provides significant improvements to DNA barcoding analysesZiheng Yang, Bruce RannalaMolecular Biology and Evolution|April 13, 2022
Estimation of Cross-Species Introgression Rates Using Genomic Data Despite Model UnidentifiabilityZiheng Yang, Tomáš FlouriPhilosophical Transactions of the Royal Society of London. Series B, Biological Sciences|February 20, 2025
Reading tree leaves: inferring speciation anfd extinction processes using phylogeniesBruce Rannala, Ziheng YangSystematic Biology|June 8, 2010
Bayesian dating of shallow phylogenies with a relaxed clockRichard P Brown, Ziheng YangProceedings of the National Academy of Sciences of the United States of America|November 13, 2013
Searching for efficient Markov chain Monte Carlo proposal kernelsZiheng Yang, Carlos E RodríguezSystematic Biology|October 8, 2003
Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene Loci and calibration points, with application to a radiation of cute-looking mouse lemur speciesZiheng Yang, Anne D YoderMolecular Biology and Evolution|September 2, 2003
Bayesian models of episodic evolution support a late precambrian explosive diversification of the MetazoaStephane Aris-Brosou, Ziheng YangPageof 400