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Systematic Biology|October 25, 2002
Effects of models of rate evolution on estimation of divergence dates with special reference to the metazoan 18S ribosomal RNA phylogenyStéphane Aris-Brosou, Ziheng YangMolecular Ecology|March 12, 2004
Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary contextAnne D Yoder, Ziheng YangBMC Evolutionary Biology|September 28, 2011
Rate variation and estimation of divergence times using strict and relaxed clocksRichard P Brown, Ziheng YangMolecular Biology and Evolution|November 1, 2017
Coalescent-Based Analyses of Genomic Sequence Data Provide a Robust Resolution of Phylogenetic Relationships among Major Groups of GibbonsCheng-Min Shi, Ziheng YangMethods in Molecular Biology (Clifton, N.J.)|July 7, 2019
Bayesian Molecular Clock Dating Using Genome-Scale DatasetsMario Dos Reis, Ziheng YangMolecular Biology and Evolution|February 12, 2011
Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence timesMario dos Reis, Ziheng YangPlos One|May 30, 2008
Duplicated paralogous genes subject to positive selection in the genome of Trypanosoma bruceiRichard D Emes, Ziheng YangJournal of Structural and Functional Genomics|July 3, 2003
Maximum likelihood methods for detecting adaptive evolution after gene duplicationJoseph P Bielawski, Ziheng YangJournal of Molecular Evolution|September 24, 2004
A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolutionJoseph P Bielawski, Ziheng YangGenetics|June 25, 2013
Why do more divergent sequences produce smaller nonsynonymous/synonymous rate ratios in pairwise sequence comparisons?Mario Dos Reis, Ziheng YangPageof 400