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Molecular Biology and Evolution|November 20, 2010
Statistical properties of the branch-site test of positive selectionZiheng Yang, Mario dos ReisMolecular Biology and Evolution|December 26, 2001
Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classesZiheng Yang, Willie J SwansonJournal of Molecular Evolution|March 19, 2008
Diversifying and purifying selection in the peptide binding region of DRB in mammalsRebecca F Furlong, Ziheng YangSystematic Biology|March 24, 2023
Estimation of species divergence times in presence of cross-species gene flowGeorge P Tiley, Tomáš Flouri, Xiyun Jiao, et al.Genetics|October 24, 2003
Likelihood models of somatic mutation and codon substitution in cancer genesZiheng Yang, Simon Ro, Bruce RannalaJournal of Molecular Evolution|January 27, 2004
Likelihood analysis of the chalcone synthase genes suggests the role of positive selection in morning glories (Ipomoea)Ji Yang, Hongya Gu, Ziheng YangSystematic Biology|February 14, 2012
Robustness of compound Dirichlet priors for Bayesian inference of branch lengthsChi Zhang, Bruce Rannala, Ziheng YangSystematic Biology|October 26, 2005
An empirical examination of the utility of codon-substitution models in phylogeny reconstructionFengrong Ren, Hiroshi Tanaka, Ziheng YangMolecular Biology and Evolution|August 19, 2005
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular levelJianzhi Zhang, Rasmus Nielsen, Ziheng YangProceedings of the National Academy of Sciences of the United States of America|July 28, 2025
The power of coalescent methods for inferring recent and ancient gene flow in endangered Bactrian camelsTianqi Zhu, Zhen Wang, Ziheng YangPageof 400