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Molecular Biology and Evolution|December 13, 2025
On the robustness of Bayesian inference of gene flow to intragenic recombination and natural selectionYuttapong Thawornwattana, Bruce Rannala, Ziheng Yang
Gene|May 27, 2008
A likelihood look at the supermatrix-supertree controversyFengrong Ren, Hiroshi Tanaka, Ziheng Yang
Genetics|May 8, 2015
Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide SubstitutionTomotaka Matsumoto, Hiroshi Akashi, Ziheng Yang
Molecular Phylogenetics and Evolution|July 5, 2011
Bayesian relaxed clock estimation of divergence times in foraminiferaMathieu Groussin, Jan Pawlowski, Ziheng Yang
National Science Review|January 6, 2022
Multispecies coalescent and its applications to infer species phylogenies and cross-species gene flowXiyun Jiao, Tomáš Flouri, Ziheng Yang
Molecular Ecology|March 21, 2022
A simulation study to examine the impact of recombination on phylogenomic inferences under the multispecies coalescent modelTianqi Zhu, Tomáš Flouri, Ziheng Yang
Molecular Biology and Evolution|September 6, 2011
Tail paradox, partial identifiability, and influential priors in Bayesian branch length inferenceBruce Rannala, Tianqi Zhu, Ziheng Yang
Genetics|July 23, 2003
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sitesMaria Anisimova, Rasmus Nielsen, Ziheng Yang
Molecular Biology and Evolution|August 14, 2018
Coalescent Analysis of Phylogenomic Data Confidently Resolves the Species Relationships in the Anopheles gambiae Species ComplexYuttapong Thawornwattana, Daniel Dalquen, Ziheng Yang
Molecular Biology and Evolution|July 10, 2020
A Simulation Study to Examine the Information Content in Phylogenomic Data Sets under the Multispecies Coalescent ModelJun Huang, Tomáš Flouri, Ziheng Yang
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