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Nature Biotechnology|January 2, 2023
A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISHBojing Blair Jia, Adam Jussila, Colin Kern, et al.
Biorxiv : the Preprint Server for Biology|December 18, 2023
Cell-type-specific 3D-genome organization and transcription regulation in the brainShiwei Liu, Pu Zheng, Cosmos Yuqi Wang, et al.
Science Advances|February 26, 2025
Cell type-specific 3D-genome organization and transcription regulation in the brainShiwei Liu, Cosmos Yuqi Wang, Pu Zheng, et al.
Nature Communications|August 12, 2023
SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH dataLindsay Lee, Hongyu Yu, Bojing Blair Jia, et al.
Arxiv|September 2, 2025
FAIR sharing of Chromatin Tracing datasets using the newly developed 4DN FISH Omics FormatRahi Navelkar, Andrea Cosolo, Bogdan Bintu, et al.
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