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Scientific Reports|February 22, 2023
Low-data interpretable deep learning prediction of antibody viscosity using a biophysically meaningful representationBrajesh K Rai, James R Apgar, Eric M BennettProtein Science : a Publication of the Protein Society|October 17, 2015
AB-Bind: Antibody binding mutational database for computational affinity predictionsSarah Sirin, James R Apgar, Eric M Bennett, et al.Proteins|January 27, 2006
Multiple mapping method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modelingBrajesh K Rai, András FiserJournal of Computational Chemistry|May 9, 2013
Fast and accurate generation of ab initio quality atomic charges using nonparametric statistical regressionBrajesh K Rai, Gregory A BakkenMabs|February 9, 2021
Combining random mutagenesis, structure-guided design and next-generation sequencing to mitigate polyreactivity of an anti-IL-21R antibodySharon M Campbell, Joseph DeBartolo, James R Apgar, et al.The Journal of Physical Chemistry. B|July 21, 2006
Single-atom test of all-atom empirical potentials: Fe in myoglobinBrajesh K Rai, Earl W Prohofsky, Stephen M DurbinCurrent Opinion in Chemical Biology|June 28, 2011
Structure-based druggability assessment--identifying suitable targets for small molecule therapeuticsEric B Fauman, Brajesh K Rai, Enoch S HuangJournal of Chemical Information and Modeling|March 13, 2023
Can We Quickly Learn to "Translate" Bioactive Molecules with Transformer Models?Emma P Tysinger, Brajesh K Rai, Anton V SinitskiyProteins|September 30, 2009
Modeling G protein-coupled receptors for structure-based drug discovery using low-frequency normal modes for refinement of homology models: application to H3 antagonistsBrajesh K Rai, Gregory J Tawa, Alan H Katz, et al.Journal of Molecular Biology|June 29, 2007
Modeling backbone flexibility to achieve sequence diversity: the design of novel alpha-helical ligands for Bcl-xLXiaoran Fu, James R Apgar, Amy E KeatingPageof 6