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Bioinformatics (Oxford, England)|August 1, 2006
General framework for developing and evaluating database scoring algorithms using the TANDEM search engineBrendan MacLean, Jimmy K Eng, Ronald C Beavis, et al.Journal of Proteome Research|November 27, 2009
Comparison of database search strategies for high precursor mass accuracy MS/MS dataEdward J Hsieh, Michael R Hoopmann, Brendan MacLean, et al.Nature Protocols|May 22, 2015
Multiplexed peptide analysis using data-independent acquisition and SkylineJarrett D Egertson, Brendan MacLean, Richard Johnson, et al.Nature Methods|November 8, 2011
Rapid empirical discovery of optimal peptides for targeted proteomicsAndrew B Stergachis, Brendan MacLean, Kristen Lee, et al.Proteomics|May 12, 2012
The development of selected reaction monitoring methods for targeted proteomics via empirical refinementMichael S Bereman, Brendan MacLean, Daniela M Tomazela, et al.Bioinformatics (Oxford, England)|May 6, 2014
MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experimentsMeena Choi, Ching-Yun Chang, Timothy Clough, et al.Molecular & Cellular Proteomics : MCP|March 1, 2018
Panorama Public: A Public Repository for Quantitative Data Sets Processed in SkylineVagisha Sharma, Josh Eckels, Birgit Schilling, et al.Journal of Proteome Research|October 5, 2016
An Automated Pipeline to Monitor System Performance in Liquid Chromatography-Tandem Mass Spectrometry Proteomic ExperimentsMichael S Bereman, Joshua Beri, Vagisha Sharma, et al.Mass Spectrometry Reviews|July 11, 2017
The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomicsLindsay K Pino, Brian C Searle, James G Bollinger, et al.Journal of Proteome Research|March 31, 2009
Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method developmentAmol Prakash, Daniela M Tomazela, Barbara Frewen, et al.Pageof 4