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BMC Genomics|January 30, 2020
QuantTB - a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing dataChristine Anyansi, Arlin Keo, Bruce J Walker, et al.Briefings in Bioinformatics|February 22, 2023
Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genesSosie Yorki, Terrance Shea, Christina A Cuomo, et al.Plos One|November 20, 2014
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvementBruce J Walker, Thomas Abeel, Terrance Shea, et al.Genome Biology|March 8, 2022
StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communitiesLucas R van Dijk, Bruce J Walker, Timothy J Straub, et al.Genome Research|July 26, 2012
Finished bacterial genomes from shotgun sequence dataFilipe J Ribeiro, Dariusz Przybylski, Shuangye Yin, et al.BMC Microbiology|February 18, 2021
Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infectionsTimothy J Straub, Wen-Chi Chou, Abigail L Manson, et al.Nature Genetics|April 12, 2016
Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistanceChristopher A Desjardins, Keira A Cohen, Vanisha Munsamy, et al.Proceedings of the National Academy of Sciences of the United States of America|December 29, 2010
High-quality draft assemblies of mammalian genomes from massively parallel sequence dataSante Gnerre, Iain Maccallum, Dariusz Przybylski, et al.The New England Journal of Medicine|August 9, 2013
Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndromeAmi S Bhatt, Samuel S Freeman, Alex F Herrera, et al.Nature Microbiology|May 3, 2022
Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in womenColin J Worby, Henry L Schreiber, Timothy J Straub, et al.Pageof 2