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IEEE Transactions on Computational Biology and Bioinformatics|August 14, 2025
Multivariate Optimization of k for k-Nearest-Neighbor Feature Selection With Dichotomous Outcomes: Complex Associations, Class Imbalance, and Application to RNA-Seq in Major Depressive DisorderBryan A Dawkins, Brett A McKinneyBioinformatics (Oxford, England)|January 14, 2020
Nearest-neighbor Projected-Distance Regression (NPDR) for detecting network interactions with adjustments for multiple tests and confoundingTrang T Le, Bryan A Dawkins, Brett A McKinneyPlos One|February 8, 2021
Theoretical properties of distance distributions and novel metrics for nearest-neighbor feature selectionBryan A Dawkins, Trang T Le, Brett A McKinneyWiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology|January 6, 2010
Informatics approaches for identifying biologic relationships in time-series dataBrett A McKinneyBioinformatics (Oxford, England)|November 28, 2018
EpistasisRank and EpistasisKatz: interaction network centrality methods that integrate prior knowledge networksSaeid Parvandeh, Brett A McKinneyMethods in Molecular Biology (Clifton, N.J.)|November 19, 2014
Network theory for data-driven epistasis networksCaleb A Lareau, Brett A McKinneyChaos (Woodbury, N.Y.)|July 2, 2010
Recursive expectation-maximization clustering: a method for identifying buffering mechanisms composed of phenomic modulesJingyu Guo, Dehua Tian, Brett A McKinney, et al.Plos Genetics|March 21, 2009
Capturing the spectrum of interaction effects in genetic association studies by simulated evaporative cooling network analysisBrett A McKinney, James E Crowe, Jingyu Guo, et al.Frontiers in Genetics|August 11, 2020
Nearest-Neighbor Projected Distance Regression for Epistasis Detection in GWAS With Population Structure CorrectionMarziyeh Arabnejad, Courtney G Montgomery, Patrick M Gaffney, et al.Bioinformatics (Oxford, England)|January 28, 2020
Consensus features nested cross-validationSaeid Parvandeh, Hung-Wen Yeh, Martin P Paulus, et al.Pageof 5