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Nature|October 22, 2004
Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneousBryan Kolaczkowski, Joseph W ThorntonMolecular Biology and Evolution|July 20, 2007
Effects of branch length uncertainty on Bayesian posterior probabilities for phylogenetic hypothesesBryan Kolaczkowski, Joseph W ThorntonPlos One|December 17, 2009
Long-branch attraction bias and inconsistency in Bayesian phylogeneticsBryan Kolaczkowski, Joseph W ThorntonMolecular Biology and Evolution|March 6, 2008
A mixed branch length model of heterotachy improves phylogenetic accuracyBryan Kolaczkowski, Joseph W ThorntonMolecular Biology and Evolution|July 14, 2006
Is there a star tree paradox?Bryan Kolaczkowski, Joseph W ThorntonMolecular Biology and Evolution|April 7, 2010
Robustness of ancestral sequence reconstruction to phylogenetic uncertaintyVictor Hanson-Smith, Bryan Kolaczkowski, Joseph W ThorntonGenome Biology and Evolution|August 14, 2020
Alignment-Integrated Reconstruction of Ancestral Sequences Improves AccuracyKelsey Aadland, Bryan KolaczkowskiBMC Bioinformatics|April 1, 2017
Improving the accuracy of high-throughput protein-protein affinity prediction may require better training dataRaquel Dias, Bryan KolaczkowskiMolecular Biology and Evolution|November 28, 2012
Evolution of animal and plant dicers: early parallel duplications and recurrent adaptation of antiviral RNA binding in plantsKrishanu Mukherjee, Henry Campos, Bryan KolaczkowskiNucleic Acids Research|May 16, 2009
INTREPID: a web server for prediction of functionally important residues by evolutionary analysisSriram Sankararaman, Bryan Kolaczkowski, Kimmen SjölanderPageof 10