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Proceedings of the National Academy of Sciences of the United States of America|January 29, 2024
Transfer learning to leverage larger datasets for improved prediction of protein stability changesHenry Dieckhaus, Michael Brocidiacono, Nicholas Z Randolph, et al.Plos One|July 15, 2011
A generic program for multistate protein designAndrew Leaver-Fay, Ron Jacak, P Benjamin Stranges, et al.Plos One|March 21, 2012
Incorporation of noncanonical amino acids into Rosetta and use in computational protein-peptide interface designP Douglas Renfrew, Eun Jung Choi, Richard Bonneau, et al.Journal of Molecular Biology|December 31, 2019
A Computational Protocol for Regulating Protein Binding Reactions with a Light-Sensitive Protein DimerFrank D Teets, Takashi Watanabe, Klaus M Hahn, et al.Proteins|November 10, 2009
Computational design of second-site suppressor mutations at protein-protein interfacesDeanne W Sammond, Ziad M Eletr, Carrie Purbeck, et al.Journal of Molecular Biology|September 2, 2003
A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteinsGautam Dantas, Brian Kuhlman, David Callender, et al.Nucleic Acids Research|December 26, 2014
SwiftLib: rapid degenerate-codon-library optimization through dynamic programmingTimothy M Jacobs, Hayretin Yumerefendi, Brian Kuhlman, et al.Journal of Chemical Theory and Computation|April 14, 2018
Rapid Sampling of Hydrogen Bond Networks for Computational Protein DesignJack B Maguire, Scott E Boyken, David Baker, et al.Journal of Computational Chemistry|February 8, 2007
Maintaining solvent accessible surface area under rotamer substitution for protein designAndrew Leaver-Fay, Glenn L Butterfoss, Jack Snoeyink, et al.Structure (London, England : 1993)|February 12, 2013
Supertertiary structure of the MAGUK core from PSD-95Jun Zhang, Steven M Lewis, Brian Kuhlman, et al.Pageof 19