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Methods in Molecular Biology (Clifton, N.J.)|April 29, 2009
Dynamic knowledge representation using agent-based modeling: ontology instantiation and verification of conceptual modelsGary AnScience Translational Medicine|July 24, 2010
Closing the scientific loop: bridging correlation and causality in the petaflop ageGary AnJournal of Critical Care|April 18, 2006
Concepts for developing a collaborative in silico model of the acute inflammatory response using agent-based modelingGary AnTheoretical Biology & Medical Modelling|May 29, 2008
Introduction of an agent-based multi-scale modular architecture for dynamic knowledge representation of acute inflammationGary AnMathematical Biosciences|October 28, 2008
A model of TLR4 signaling and tolerance using a qualitative, particle-event-based method: introduction of spatially configured stochastic reaction chambers (SCSRC)Gary AnCritical Care Medicine|October 16, 2004
In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modelingGary AnBulletin of Mathematical Biology|September 9, 2018
The Crisis of Reproducibility, the Denominator Problem and the Scientific Role of Multi-scale ModelingGary AnWiley Interdisciplinary Reviews. Systems Biology and Medicine|July 2, 2019
Agent-based models of inflammation in translational systems biology: A decade laterYoram Vodovotz, Gary AnMathematical Biosciences|August 5, 2014
An agent-based modeling framework linking inflammation and cancer using evolutionary principles: description of a generative hierarchy for the hallmarks of cancer and developing a bridge between mechanism and epidemiological dataGary An, Swati KulkarniComputational and Mathematical Organization Theory|August 31, 2013
A proposal for augmenting biological model construction with a semi-intelligent computational modeling assistantScott Christley, Gary AnPageof 11