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Physical Review Letters|December 11, 2012
Facilitated diffusion on mobile DNA: configurational traps and sequence heterogeneityC A Brackley, M E Cates, D MarenduzzoPhysical Review Letters|August 29, 2014
Intracellular facilitated diffusion: searchers, crowders, and blockersC A Brackley, M E Cates, D MarenduzzoBriefings in Functional Genomics|January 24, 2020
Bridging-induced microphase separation: photobleaching experiments, chromatin domains and the need for active reactionsC A Brackley, D MarenduzzoThe Journal of Chemical Physics|April 10, 2014
Models for twistable elastic polymers in Brownian dynamics, and their implementation for LAMMPSC A Brackley, A N Morozov, D MarenduzzoJournal of the Royal Society, Interface|February 17, 2012
Cytoplasmic streaming in plant cells: the role of wall slipK Wolff, D Marenduzzo, M E CatesJournal of Physics. Condensed Matter : an Institute of Physics Journal|January 8, 2015
A simple model for DNA bridging proteins and bacterial or human genomes: bridging-induced attraction and genome compactionJ Johnson, C A Brackley, P R Cook, et al.Nucleic Acids Research|November 30, 2014
Topological constraints strongly affect chromatin reconstitution in silicoC A Brackley, J Allan, D Keszenman-Pereyra, et al.Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|May 24, 2011
Nonlinear dynamics and rheology of active fluids: simulations in two dimensionsS M Fielding, D Marenduzzo, M E CatesSoft Matter|April 26, 2018
Non-equilibrium phase transition in a model for supercoiling-dependent DNA transcriptionA Bentivoglio, M Ancona, C A Brackley, et al.Soft Matter|February 19, 2020
Chromosome compaction and chromatin stiffness enhance diffusive loop extrusion by slip-link proteinsA Bonato, C A Brackley, J Johnson, et al.Pageof 17