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Nucleic Acids Research|November 30, 2014
Topological constraints strongly affect chromatin reconstitution in silicoC A Brackley, J Allan, D Keszenman-Pereyra, et al.
Soft Matter|April 26, 2018
Non-equilibrium phase transition in a model for supercoiling-dependent DNA transcriptionA Bentivoglio, M Ancona, C A Brackley, et al.
Soft Matter|February 19, 2020
Chromosome compaction and chromatin stiffness enhance diffusive loop extrusion by slip-link proteinsA Bonato, C A Brackley, J Johnson, et al.
Nature Communications|November 25, 2021
Mechanisms for destabilisation of RNA viruses at air-water and liquid-liquid interfacesC A Brackley, A Lips, A Morozov, et al.
Soft Matter|July 12, 2019
Non-equilibrium effects of molecular motors on polymersM Foglino, E Locatelli, C A Brackley, et al.
The Journal of Chemical Physics|August 3, 2017
Entropic elasticity and dynamics of the bacterial chromosome: A simulation studyM C F Pereira, C A Brackley, J S Lintuvuori, et al.
Soft Matter|November 16, 2016
A single nucleotide resolution model for large-scale simulations of double stranded DNAY A G Fosado, D Michieletto, J Allan, et al.
Physical Review Letters|July 16, 2016
Stochastic Model of Supercoiling-Dependent TranscriptionC A Brackley, J Johnson, A Bentivoglio, et al.
Nucleus (Austin, Tex.)|November 15, 2016
Simulating topological domains in human chromosomes with a fitting-free modelC A Brackley, D Michieletto, F Mouvet, et al.
Nucleus (Austin, Tex.)|January 5, 2018
Extrusion without a motor: a new take on the loop extrusion model of genome organizationC A Brackley, J Johnson, D Michieletto, et al.
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