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Nature Cell Biology|February 2, 2023
Biologically informed deep learning to query gene programs in single-cell atlasesMohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, et al.Cell Systems|November 25, 2016
Analysis of Cell Lineage Trees by Exact Bayesian Inference Identifies Negative Autoregulation of Nanog in Mouse Embryonic Stem CellsJustin Feigelman, Stefan Ganscha, Simon Hastreiter, et al.BMC Genomics|October 31, 2025
Integrating single-cell RNA-seq datasets with substantial batch effectsKarin Hrovatin, Amir Ali Moinfar, Luke Zappia, et al.Bioinformatics (Oxford, England)|June 28, 2024
GraphCompass: spatial metrics for differential analyses of cell organization across conditionsMayar Ali, Merel Kuijs, Soroor Hediyeh-Zadeh, et al.Nature Communications|November 17, 2021
scPower accelerates and optimizes the design of multi-sample single cell transcriptomic studiesKatharina T Schmid, Barbara Höllbacher, Cristiana Cruceanu, et al.Science (New York, N.Y.)|May 16, 2015
Neurodevelopment. Live imaging of adult neural stem cell behavior in the intact and injured zebrafish brainJoana S Barbosa, Rosario Sanchez-Gonzalez, Rossella Di Giaimo, et al.Plos Computational Biology|March 3, 2020
Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell linesElba Raimúndez, Simone Keller, Gwen Zwingenberger, et al.Journal of Proteome Research|December 2, 2014
Network-based approach for analyzing intra- and interfluid metabolite associations in human blood, urine, and salivaKieu Trinh Do, Gabi Kastenmüller, Dennis O Mook-Kanamori, et al.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|November 16, 2007
How to extract marker genes from microarray data setsR Schachtner, D Lutter, F J Theis Theis, et al.BMC Bioinformatics|February 26, 2014
iVUN: interactive Visualization of Uncertain biochemical reaction NetworksCorinna Vehlow, Jan Hasenauer, Andrei Kramer, et al.Pageof 52