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Biorxiv : the Preprint Server for Biology|July 19, 2024
Multi-dataset Integration and Residual Connections Improve Proteome Prediction from Transcriptomes using Deep LearningCaleb W Cranney, Jesse G MeyerAnalytical Chemistry|September 1, 2021
CsoDIAq Software for Direct Infusion Shotgun Proteome AnalysisCaleb W Cranney, Jesse G MeyerAnalytical Chemistry|December 17, 2022
Label-Free Quantification from Direct Infusion Shotgun Proteome Analysis (DISPA-LFQ) with CsoDIAq SoftwareYuming Jiang, Alexandre Hutton, Caleb W Cranney, et al.Methods and Protocols|April 23, 2019
Fast Proteome Identification and Quantification from Data-Dependent Acquisition-Tandem Mass Spectrometry (DDA MS/MS) Using Free Software ToolsJesse G MeyerJournal of Proteome Research|January 6, 2026
Vibe Coding Omics Data Analysis ApplicationsJesse G MeyerMethods in Molecular Biology (Clifton, N.J.)|March 9, 2021
Qualitative and Quantitative Shotgun Proteomics Data Analysis from Data-Dependent Acquisition Mass SpectrometryJesse G MeyerISRN Computational Biology|January 29, 2019
<i>In Silico</i> Proteome Cleavage Reveals Iterative Digestion Strategy for High Sequence CoverageJesse G MeyerPlos Computational Biology|January 28, 2022
Positional SHAP (PoSHAP) for Interpretation of machine learning models trained from biological sequencesQuinn Dickinson, Jesse G MeyerPageof 9