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Current Opinion in Plant Biology|March 18, 2014
Seeing the forest for the trees: annotating small RNA producing genes in plantsCeyda Coruh, Saima Shahid, Michael J Axtell
The Plant Cell|July 26, 2015
Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land PlantsCeyda Coruh, Sung Hyun Cho, Saima Shahid, et al.
The Plant Cell|April 22, 2010
Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genusZhaorong Ma, Ceyda Coruh, Michael J Axtell
The Plant Cell|December 25, 2012
miR156 and miR390 regulate tasiRNA accumulation and developmental timing in Physcomitrella patensSung Hyun Cho, Ceyda Coruh, Michael J Axtell
Methods (San Diego, Calif.)|October 22, 2013
Identification and annotation of small RNA genes using ShortStackSaima Shahid, Michael J Axtell
Nucleic Acids Research|May 22, 2016
Genome-wide analysis of single non-templated nucleotides in plant endogenous siRNAs and miRNAsFeng Wang, Nathan R Johnson, Ceyda Coruh, et al.
G3 (Bethesda, Md.)|May 14, 2016
Improved Placement of Multi-mapping Small RNAsNathan R Johnson, Jonathan M Yeoh, Ceyda Coruh, et al.
Nature|January 5, 2018
MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAsSaima Shahid, Gunjune Kim, Nathan R Johnson, et al.
Genome Research|March 18, 2020
Integrated annotations and analyses of small RNA-producing loci from 47 diverse plantsAlice Lunardon, Nathan R Johnson, Emily Hagerott, et al.
Plos Genetics|December 20, 2008
Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal developmentSung Hyun Cho, Charles Addo-Quaye, Ceyda Coruh, et al.
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