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Computational and Structural Biotechnology Journal|October 13, 2025
When does molecular dynamics improve RNA models? Insights from CASP15 and practical guidelinesChandran Nithin, Smita P Pilla, Sebastian KmiecikComputational and Structural Biotechnology Journal|April 13, 2026
Antagonist Binding Actively Disrupts Interleukin-1 Receptor Dynamics to Block Co-receptor RecruitmentChandran Nithin, Ayomide Fasemire, Sebastian KmiecikProtein Science : a Publication of the Protein Society|August 28, 2024
Exploring protein functions from structural flexibility using CABS-flex modelingChandran Nithin, Rocco Peter Fornari, Smita P Pilla, et al.Drug Discovery Today|May 21, 2025
Computational methods for modeling protein-protein interactions in the AI era: Current status and future directionsHao Li, Chandran Nithin, Sebastian Kmiecik, et al.Nucleic Acids Research|June 25, 2024
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA-ligand interactionsChandran Nithin, Sebastian Kmiecik, Roman Błaszczyk, et al.Nucleic Acids Research|May 7, 2022
MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexesAleksandra E Badaczewska-Dawid, Chandran Nithin, Karol Wroblewski, et al.International Journal of Biological Macromolecules|August 18, 2019
Residue conservation elucidates the evolution of r-proteins in ribosomal assembly and functionSmita P Pilla, Ranjit Prasad BahadurFrontiers in Plant Science|December 5, 2015
Targeting Non-Coding RNAs in Plants with the CRISPR-Cas Technology is a Challenge yet Worth AcceptingJolly Basak, Chandran NithinJournal of Molecular Recognition : JMR|May 3, 2019
Dissecting protein-protein interactions in proteasome assembly: Implication to its self-assemblySmita P Pilla, Babu R, Ranjit P BahadurRNA Biology|June 11, 2019
Dissecting macromolecular recognition sites in ribosome: implication to its self-assemblySmita P Pilla, Amal Thomas, Ranjit Prasad BahadurPageof 12