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Oncogene|July 2, 2025
Integrative epigenome and transcriptome analyses reveal transcriptional programs differentially regulated by ASCL1 and NEUROD1 in small cell lung cancerHiroshi Takumida, Akira Saito, Yugo Okabe, et al.
Computational and Structural Biotechnology Journal|November 13, 2023
Probiotic responder identification in cross-over trials for constipation using a Bayesian statistical model considering lags between intake and effect periodsShion Hosoda, Yuichiro Nishimoto, Yohsuke Yamauchi, et al.
Bioinformatics (Oxford, England)|December 20, 2008
Prediction of RNA secondary structure using generalized centroid estimatorsMichiaki Hamada, Hisanori Kiryu, Kengo Sato, et al.
Bioinformatics (Oxford, England)|May 30, 2009
Predictions of RNA secondary structure by combining homologous sequence informationMichiaki Hamada, Kengo Sato, Hisanori Kiryu, et al.
Mobile DNA|April 4, 2025
REPrise: de novo interspersed repeat detection using inexact seedingAtsushi Takeda, Daisuke Nonaka, Yuta Imazu, et al.
Bioinformatics (Oxford, England)|August 16, 2006
Mining frequent stem patterns from unaligned RNA sequencesMichiaki Hamada, Koji Tsuda, Taku Kudo, et al.
Bioinformatics (Oxford, England)|October 8, 2009
CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs scoreMichiaki Hamada, Kengo Sato, Hisanori Kiryu, et al.
Bioinformatics (Oxford, England)|June 21, 2011
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programmingKengo Sato, Yuki Kato, Michiaki Hamada, et al.
BMC Genomics|January 29, 2016
Comprehensive prediction of lncRNA-RNA interactions in human transcriptomeGoro Terai, Junichi Iwakiri, Tomoshi Kameda, et al.
Nature Computational Science|January 4, 2024
Generative aptamer discovery using RaptGenNatsuki Iwano, Tatsuo Adachi, Kazuteru Aoki, et al.
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