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Current Opinion in HIV and AIDS|August 3, 2023
Features of functional and dysfunctional CD8+ T cells to guide HIV vaccine developmentShaown Bhattacharyya, Charles R Crain, Benjamin Goldberg, et al.Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America|April 27, 2021
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Sequence Characteristics of Coronavirus Disease 2019 (COVID-19) Persistence and ReinfectionManish C Choudhary, Charles R Crain, Xueting Qiu, et al.Nature Machine Intelligence|February 26, 2025
Deep learning enhances the prediction of HLA class I-presented CD8+ T cell epitopes in foreign pathogensJeremy Wohlwend, Anusha Nathan, Nitan Shalon, et al.The Journal of Experimental Medicine|July 17, 2025
In vivo antibody diversification targeting a conserved coronavirus epitopeUsha Nair, Ziqi Feng, Madhav Akauliya, et al.Structure (London, England : 1993)|May 11, 2024
Polymorphic residues in HLA-B that mediate HIV control distinctly modulate peptide interactions with both TCR and KIR moleculesRhoda Tano-Menka, Nishant K Singh, Itai Muzhingi, et al.Biorxiv : the Preprint Server for Biology|July 17, 2026
NK-like and networked CD8 + T cell immunity mediates exceptional HIV controlAljawharah Alrubayyi, Anna K Traunbauer, Charles R Crain, et al.Science Translational Medicine|April 22, 2026
Expansion of stemlike HIV-specific CD8+ T cells and limited viral epitope diversity characterize durable posttreatment control of HIVCharles R Crain, Aljawharah Alrubayyi, Itai Muzhingi, et al.The Journal of Infectious Diseases|May 8, 2024
Characterization of Treatment Resistance and Viral Kinetics in the Setting of Single-Active Versus Dual-Active Monoclonal Antibodies Against Severe Acute Respiratory Syndrome Coronavirus 2Manish C Choudhary, Rinki Deo, Teresa H Evering, et al.Nature Genetics|July 28, 2025
Massively parallel immunopeptidome by DNA sequencing provides insights into cancer antigen presentationQuanming Shi, Elana P Simon, Cansu Cimen Bozkus, et al.Cell Reports. Medicine|July 6, 2022
Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infectionJulie Boucau, Kara W Chew, Manish C Choudhary, et al.Pageof 2