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Molecular Biology and Evolution|August 12, 2025
Reduced Amino Acid Substitution Matrices Find Traces of Ancient Coding Alphabets in Modern Day ProteinsJordan Douglas, Remco Bouckaert, Charles W Carter, et al.International Journal of Molecular Sciences|February 15, 2022
Multidimensional Phylogenetic Metrics Identify Class I Aminoacyl-tRNA Synthetase Evolutionary Mosaicity and Inter-Modular CouplingCharles W Carter, Alex Popinga, Remco Bouckaert, et al.Proceedings. Biological Sciences|May 27, 2025
Evolution is coupled with branching across many granularities of lifeJordan Douglas, Remco Bouckaert, Simon C Harris, et al.Nucleic Acids Research|November 4, 2024
A genomic database furnishes minimal functional glycyl-tRNA synthetases homologous to other, designed class II urzymesSourav Kumar Patra, Jordan Douglas, Peter R Wills, et al.Biorxiv : the Preprint Server for Biology|January 23, 2024
Genomic database furnishes a spontaneous example of a functional Class II glycyl-tRNA synthetase urzymeSourav Kumar Patra, Jordan Douglas, Peter R Wills, et al.Structural Dynamics (Melville, N.Y.)|April 28, 2025
Aminoacyl-tRNA synthetase urzymes optimized by deep learning behave as a quasispeciesSourav Kumar Patra, Nicholas Randolph, Brian Kuhlman, et al.Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences|February 10, 2016
The generation of meaningful information in molecular systemsPeter R WillsBiophysical Reviews|May 17, 2017
A Hilly path through the thermodynamics and statistical mechanics of protein solutionsPeter R WillsJournal of Theoretical Biology|January 29, 2009
Informed Generation: physical origin and biological evolution of genetic codescript interpretersPeter R WillsJournal of Theoretical Biology|March 5, 2013
Frameshifted prion proteins as pathological agents: quantitative considerationsPeter R WillsPageof 10