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Bioinformatics Advances|July 1, 2026
maldipickr dereplicates microbial MALDI-TOF spectra to facilitate multiplexed isolationCharlie Pauvert, David Wylensek, Selina Nüchtern, et al.Peerj|November 19, 2025
Fast and robust estimate of bacterial genus novelty using the percentage of conserved proteins with unique matches (POCPu)Charlie Pauvert, Thomas C A Hitch, Thomas ClavelNature Biotechnology|April 29, 2025
Enabling next-generation anaerobic cultivation through biotechnology to advance functional microbiome researchThomas Clavel, Franziska Faber, Mathieu Groussin, et al.Nature Microbiology|April 21, 2026
Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysisNicole S Treichel, Charlie Pauvert, Joana Séneca, et al.Systematic and Applied Microbiology|August 20, 2024
Harmonious naming across nomenclature codes exemplified by the description of bacterial isolates from the mammalian gutThomas C A Hitch, David Wylensek, Kevin Bisdorf, et al.Microbiome Research Reports|January 1, 2025
Gut microbiota prevents small intestinal tumor formation due to bile acids in gnotobiotic miceEsther Wortmann, David Wylensek, Marijana Basic, et al.Msystems|August 25, 2022
Toward FAIR Representations of Microbial InteractionsAlan R Pacheco, Charlie Pauvert, Dileep Kishore, et al.Scientific Reports|November 1, 2019
Differentiation of Induced Pluripotent Stem Cells towards Mesenchymal Stromal Cells is Hampered by Culture in 3D HydrogelsRoman Goetzke, Hans Keijdener, Julia Franzen, et al.Nature Communications|May 6, 2025
HiBC: a publicly available collection of bacterial strains isolated from the human gutThomas C A Hitch, Johannes M Masson, Charlie Pauvert, et al.Inflammatory Bowel Diseases|May 4, 2007
Bacteria- and host-derived mechanisms to control intestinal epithelial cell homeostasis: implications for chronic inflammationThomas Clavel, Dirk HallerPageof 15