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Gut Pathogens|July 17, 2020
Understanding Horizontal Gene Transfer network in human gut microbiotaChen Li, Jiaxing Chen, Shuai Cheng LiBMC Genomics|December 29, 2020
Deep learning for HGT insertion sites recognitionChen Li, Jiaxing Chen, Shuai Cheng LiIEEE/ACM Transactions on Computational Biology and Bioinformatics|September 11, 2015
Parameterized BLOSUM Matrices for Protein AlignmentDandan Song, Jiaxing Chen, Guang Chen, et al.Algorithms for Molecular Biology : AMB|January 5, 2013
The difficulty of protein structure alignment under the RMSDShuai Cheng LiComputational and Structural Biotechnology Journal|March 28, 2022
Both simulation and sequencing data reveal coinfections with multiple SARS-CoV-2 variants in the COVID-19 pandemicYinhu Li, Yiqi Jiang, Zhengtu Li, et al.Nucleic Acids Research|November 14, 2022
Incorporating cell hierarchy to decipher the functional diversity of single cellsLingxi Chen, Shuai Cheng LiBriefings in Bioinformatics|February 8, 2023
Deep autoregressive generative models capture the intrinsics embedded in T-cell receptor repertoiresYuepeng Jiang, Shuai Cheng LiBMC Bioinformatics|January 15, 2010
Calibur: a tool for clustering large numbers of protein decoysShuai Cheng Li, Yen Kaow NgBioinformatics (Oxford, England)|July 17, 2025
AffMB: affinity maturation analysis with SHM-guided B-cell lineage treesJiaqi Luo, Yiping Zou, Shuai Cheng LiMicrobiome|December 5, 2025
Deciphering the personalized functional redundancy hierarchy in the gut microbiomeYiqi Jiang, Lijia Che, Shuai Cheng LiPageof 669