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Genome Research|July 27, 2022
Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphsAmatur Rahman, Paul MedvedevAlgorithms for Molecular Biology : AMB|May 4, 2024
ESKEMAP: exact sketch-based read mappingTizian Schulz, Paul MedvedevLipics : Leibniz International Proceedings in Informatics|April 29, 2025
PLA-index: A k-mer Index Exploiting Rank Curve LinearityHasin Abrar, Paul MedvedevJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 18, 2020
De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality Value-Based AlgorithmKristoffer Sahlin, Paul MedvedevNature Communications|December 11, 2020
Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZIlia Minkin, Paul MedvedevIscience|June 21, 2020
Scalable Pairwise Whole-Genome Homology Mapping of Long Genomes with BubbZIlia Minkin, Paul MedvedevBioinformatics (Oxford, England)|June 5, 2013
Informed and automated k-mer size selection for genome assemblyRayan Chikhi, Paul MedvedevNature Communications|January 5, 2021
Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysisKristoffer Sahlin, Paul MedvedevBioinformatics (Oxford, England)|July 7, 2026
The gift of novelty: repeat-robust k-mer-based estimators of mutation ratesHaonan Wu, Paul MedvedevBioinformatics (Oxford, England)|September 11, 2019
Improved representation of sequence bloom treesRobert S Harris, Paul MedvedevPageof 144