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BMC Bioinformatics|May 31, 2020
The corrected gene proximity map for analyzing the 3D genome organization using Hi-C dataCheng Ye, Alberto Paccanaro, Mark Gerstein, et al.
Plos Computational Biology|July 26, 2017
MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutionsKoon-Kiu Yan, Shaoke Lou, Mark Gerstein
Cell Systems|March 28, 2020
Comparing Technological Development and Biological Evolution from a Network PerspectiveKoon-Kiu Yan, Daifeng Wang, Kun Xiong, et al.
Trends in Genetics : TIG|March 24, 2016
Temporal Dynamics of Collaborative Networks in Large Scientific ConsortiaDaifeng Wang, Koon-Kiu Yan, Joel Rozowsky, et al.
Plos One|February 4, 2010
Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation dataKevin Y Yip, Roger P Alexander, Koon-Kiu Yan, et al.
Nature Communications|September 12, 2020
Predicting the frequencies of drug side effectsDiego Galeano, Shantao Li, Mark Gerstein, et al.
Bioinformatics (Oxford, England)|February 4, 2006
Predicting interactions in protein networks by completing defective cliquesHaiyuan Yu, Alberto Paccanaro, Valery Trifonov, et al.
Proceedings of the National Academy of Sciences of the United States of America|May 5, 2010
Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networksKoon-Kiu Yan, Gang Fang, Nitin Bhardwaj, et al.
Genome Biology|September 25, 2014
OrthoClust: an orthology-based network framework for clustering data across multiple speciesKoon-Kiu Yan, Daifeng Wang, Joel Rozowsky, et al.
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