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Nucleic Acids Research|May 16, 2025
ClusterONE Web: a tool for discovering and analyzing overlapping protein complexesMarcelo Baez, Ruben Jimenez, Luca Cernuzzi, et al.Nucleic Acids Research|March 21, 2006
Spectral clustering of protein sequencesAlberto Paccanaro, James A Casbon, Mansoor A S SaqiPlos Computational Biology|April 18, 2015
Loregic: a method to characterize the cooperative logic of regulatory factorsDaifeng Wang, Koon-Kiu Yan, Cristina Sisu, et al.European Journal of Human Genetics : EJHG|January 10, 2024
LanDis: the disease landscape explorerHoracio Caniza, Juan J Cáceres, Mateo Torres, et al.Journal of the Royal Society, Interface|August 22, 2014
Progressive promoter element combinations classify conserved orthogonal plant circadian gene expression modulesSandra P Smieszek, Haixuan Yang, Alberto Paccanaro, et al.Nucleic Acids Research|July 14, 2012
GFam: a platform for automatic annotation of gene familiesRajkumar Sasidharan, Tamás Nepusz, David Swarbreck, et al.Plos One|August 11, 2012
Computational selection of transcriptomics experiments improves Guilt-by-Association analysesPrajwal Bhat, Haixuan Yang, László Bögre, et al.Plos Computational Biology|April 2, 2025
Host centric drug repurposing for viral diseasesSuzana de Siqueira Santos, Haixuan Yang, Aldo Galeano, et al.Bioinformatics (Oxford, England)|January 15, 2011
AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excisionAlexej Abyzov, Mark GersteinBMC Bioinformatics|January 13, 2004
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structuresVadim Alexandrov, Mark GersteinPageof 108