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Journal of the American Statistical Association|July 26, 2021
Nonbifurcating Phylogenetic Tree Inference via the Adaptive LASSOCheng Zhang, V U Dinh, Frederick A MatsenBulletin of Mathematical Biology|March 18, 2026
Vector Encoding of Phylogenetic Trees by Ordered Leaf AttachmentDavid Harry Richman, Cheng Zhang, Frederick A MatsenSystematic Biology|September 15, 2006
A geometric approach to tree shape statisticsFrederick A MatsenIEEE/ACM Transactions on Computational Biology and Bioinformatics|January 31, 2009
Fourier transform inequalities for phylogenetic treesFrederick A MatsenJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|May 27, 2010
constNJ: an algorithm to reconstruct sets of phylogenetic trees satisfying pairwise topological constraintsFrederick A MatsenArxiv|February 20, 2025
PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational AutoencodersTianyu Xie, Harry Richman, Jiansi Gao, et al.International Orthopaedics|January 25, 2015
The ream and run: not for every patient, every surgeon or every problemFrederick A MatsenInternational Orthopaedics|June 1, 2026
Identifying surgeon-controlled factors associated with acromial fractures after reverse total shoulder arthroplasty: a case-control approach for individual surgeonsFrederick A Matsen IiiAlgorithms for Molecular Biology : AMB|May 3, 2012
Reconciling taxonomy and phylogenetic inference: formalism and algorithms for describing discord and inferring taxonomic rootsFrederick A Matsen, Aaron GallagherPageof 677