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Nature Protocols|October 19, 2022
Optimized single-nucleus transcriptional profiling by combinatorial indexingBeth K Martin, Chengxiang Qiu, Eva Nichols, et al.Nature Protocols|September 2, 2016
The power of multiplexed functional analysis of genetic variantsMolly Gasperini, Lea Starita, Jay ShendureGenomics, Proteomics & Bioinformatics|February 16, 2016
Understanding Spatial Genome Organization: Methods and InsightsVijay Ramani, Jay Shendure, Zhijun DuanCell Reports|February 28, 2019
High Sensitivity Profiling of Chromatin Structure by MNase-SSPVijay Ramani, Ruolan Qiu, Jay ShendureNature Biotechnology|August 4, 2015
High-throughput determination of RNA structure by proximity ligationVijay Ramani, Ruolan Qiu, Jay ShendureNature Protocols|June 6, 2024
Molecular recording using DNA TypewriterHanna Liao, Junhong Choi, Jay ShendureBiorxiv : the Preprint Server for Biology|October 3, 2025
Dual-patterned pluripotent stem cells self-organize into a human embryo model with extended anterior-posterior patterningZukai Liu, Chengxiang Qiu, Connor A Kubo, et al.Elife|May 14, 2019
A combination of transcription factors mediates inducible interchromosomal contactsSeungsoo Kim, Maitreya J Dunham, Jay ShendureBiorxiv : the Preprint Server for Biology|February 26, 2024
Induction and <i>in silico</i> staging of human gastruloids with neural tube, segmented somites & advanced cell typesNobuhiko Hamazaki, Wei Yang, Connor Kubo, et al.Genome Medicine|May 6, 2011
Genome interrupted: sequencing of prostate cancer reveals the importance of chromosomal rearrangementsAkash Kumar, Jay Shendure, Peter S NelsonPageof 47