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Ecosal Plus|June 12, 2024
Spatio-temporal organization of the <i>E. coli</i> chromosome from base to cellular length scalesSonya K Royzenblat, Lydia FreddolinoMbio|February 14, 2023
Escherichia coli Leucine-Responsive Regulatory Protein Bridges DNA <i>In Vivo</i> and Tunably Dissociates in the Presence of Exogenous LeucineChristine A Ziegler, Lydia FreddolinoJournal of Molecular Biology|April 7, 2024
Enricherator: A Bayesian Method for Inferring Regularized Genome-wide Enrichments from Sequencing Count DataJeremy W Schroeder, P Lydia FreddolinoJournal of Bacteriology|November 15, 2011
Newly identified genetic variations in common Escherichia coli MG1655 stock culturesLydia Freddolino, Sasan Amini, Saeed TavazoieThe Journal of Physical Chemistry. B|July 21, 2006
When light falls in LOV: a quantum mechanical/molecular mechanical study of photoexcitation in Phot-LOV1 of Chlamydomonas reinhardtiiMarkus Dittrich, Lydia Freddolino, Klaus SchultenJournal of Bacteriology|December 10, 2013
Revealing the genetic basis of natural bacterial phenotypic divergenceLydia Freddolino, Hani Goodarzi, Saeed TavazoieJournal of Bacteriology|July 25, 2022
Escherichia coli YigI is a Conserved Gammaproteobacterial Acyl-CoA Thioesterase Permitting Metabolism of Unusual Fatty Acid SubstratesMichael Schmidt, Theresa Proctor, Rucheng Diao, et al.Biorxiv : the Preprint Server for Biology|January 20, 2025
DNA methylation affects gene expression but not global chromatin structure in <i>Escherichia coli</i>Willow Jay Morgan, Haley M Amemiya, Lydia FreddolinoNucleic Acids Research|September 22, 2022
Genetic context effects can override canonical cis regulatory elements in Escherichia coliScott A Scholz, Chase D Lindeboom, Lydia FreddolinoBiorxiv : the Preprint Server for Biology|February 20, 2025
ShapeME: A tool and web front-end for de novo discovery of structural motifs underpinning protein-DNA interactionsJeremy W Schroeder, Michael B Wolfe, Lydia FreddolinoPageof 26