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Msphere|June 26, 2024
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of <i>Vibrio cholerae</i>Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, et al.Microbiology and Molecular Biology Reviews : MMBR|July 31, 2020
A Thermosensitive, Phase-Variable Epigenetic Switch: <i>pap</i> RevisitedMario Zamora, Christine A Ziegler, Lydia Freddolino, et al.Methods in Molecular Biology (Clifton, N.J.)|July 19, 2024
High-Throughput Mapping of Chromosomal Conformations in E. coli Under Physiological Conditions Using Massively Multiplexed Mu TranspositionKhang Ho, Sonya K Royzenblat, Brady Wilkins, et al.The Journal of Physical Chemistry. B|September 24, 2010
Simulations of a protein crystal with a high resolution X-ray structure: evaluation of force fields and water modelsDavid S Cerutti, Lydia Freddolino, Robert E Duke, et al.Biorxiv : the Preprint Server for Biology|January 23, 2024
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of <i>Vibrio cholerae</i>Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, et al.BMC Bioinformatics|June 20, 2023
BeEM: fast and faithful conversion of mmCIF format structure files to PDB formatChengxin ZhangThe Journal of Physical Chemistry. B|August 19, 2007
Assembly of lipids and proteins into lipoprotein particlesAmy Y Shih, Anton Arkhipov, Lydia Freddolino, et al.Journal of Chemical Theory and Computation|January 31, 2009
Vulnerability in Popular Molecular Dynamics Packages Concerning Langevin and Andersen DynamicsDavid S Cerutti, Robert Duke, Lydia Freddolino, et al.Nature Protocols|April 28, 2026
Profiling large-scale protein occupancy on bacterial genomes using IPOD-HRRebecca L Hurto, Jeremy W Schroeder, Julian Trouillon, et al.Elife|March 23, 2023
Nutrigenomic regulation of sensory plasticityHayeon Sung, Anoumid Vaziri, Daniel Wilinski, et al.Pageof 26