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Human Molecular Genetics|March 16, 2006
Uneven size distribution of mammalian genes in the number of tissues expressed and in the number of co-expressed genesSong Liu, Chi Zhang, Yaoqi ZhouProteins|June 28, 2005
Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy functionChi Zhang, Song Liu, Yaoqi ZhouJournal of Proteome Research|April 13, 2005
Domain graph of Arabidopsis proteome by comparative analysisSong Liu, Chi Zhang, Yaoqi ZhouJournal of Proteome Research|April 11, 2006
Fast and accurate method for identifying high-quality protein-interaction modules by clique merging and its application to yeastChi Zhang, Song Liu, Yaoqi ZhouProtein Science : a Publication of the Protein Society|January 24, 2004
Accurate and efficient loop selections by the DFIRE-based all-atom statistical potentialChi Zhang, Song Liu, Yaoqi ZhouNucleic Acids Research|August 9, 2006
Protein binding site prediction using an empirical scoring functionShide Liang, Chi Zhang, Song Liu, et al.Cell Biochemistry and Biophysics|October 3, 2006
What is a desirable statistical energy function for proteins and how can it be obtained?Yaoqi Zhou, Hongyi Zhou, Chi Zhang, et al.Biophysical Journal|June 11, 2004
The dependence of all-atom statistical potentials on structural training databaseChi Zhang, Song Liu, Hongyi Zhou, et al.Protein Science : a Publication of the Protein Society|January 24, 2004
An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference stateChi Zhang, Song Liu, Hongyi Zhou, et al.Proteins|July 12, 2007
A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoysShide Liang, Song Liu, Chi Zhang, et al.Pageof 788