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Journal of Biomedical Informatics|January 25, 2024
Adjusting for false discoveries in constraint-based differential metabolic flux analysisBruno G Galuzzi, Luca Milazzo, Chiara DamianiBMC Bioinformatics|October 26, 2022
Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cellsBruno G Galuzzi, Marco Vanoni, Chiara DamianiPlos Computational Biology|November 8, 2021
GPRuler: Metabolic gene-protein-reaction rules automatic reconstructionMarzia Di Filippo, Chiara Damiani, Dario PesciniComputational Biology and Chemistry|December 19, 2012
Parameter sensitivity analysis of stochastic models: application to catalytic reaction networksChiara Damiani, Alessandro Filisetti, Alex Graudenzi, et al.BMC Bioinformatics|April 27, 2021
Accelerated global sensitivity analysis of genome-wide constraint-based metabolic modelsMarco S Nobile, Vasco Coelho, Dario Pescini, et al.Current Opinion in Biotechnology|April 12, 2020
Systems metabolomics: from metabolomic snapshots to design principlesChiara Damiani, Daniela Gaglio, Elena Sacco, et al.Bioinformatics Advances|July 1, 2024
Perspectives on computational modeling of biological systems and the significance of the SysMod communityBhanwar Lal Puniya, Meghna Verma, Chiara Damiani, et al.Bioinformatics (Oxford, England)|October 14, 2021
PMCE: efficient inference of expressive models of cancer evolution with high prognostic powerFabrizio Angaroni, Kevin Chen, Chiara Damiani, et al.BMC Bioinformatics|February 6, 2016
CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworksAndrea Paroni, Alex Graudenzi, Giulio Caravagna, et al.Life (Basel, Switzerland)|December 6, 2014
Growth and division in a dynamic protocell modelMarco Villani, Alessandro Filisetti, Alex Graudenzi, et al.Pageof 4