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Nucleic Acids Research|March 2, 2019
Cell lineage inference from SNP and scRNA-Seq dataJun Ding, Chieh Lin, Ziv Bar-JosephPlos Computational Biology|February 19, 2020
Inferring TF activation order in time series scRNA-Seq studiesChieh Lin, Jun Ding, Ziv Bar-JosephBioinformatics (Oxford, England)|May 1, 2019
Continuous-state HMMs for modeling time-series single-cell RNA-Seq dataChieh Lin, Ziv Bar-JosephBioinformatics (Oxford, England)|October 17, 2017
MethRaFo: MeDIP-seq methylation estimate using a Random Forest RegressorJun Ding, Ziv Bar-JosephNature Communications|June 18, 2020
Single-cell lineage tracing by integrating CRISPR-Cas9 mutations with transcriptomic dataHamim Zafar, Chieh Lin, Ziv Bar-JosephBioinformatics (Oxford, England)|September 5, 2020
Identifying signaling genes in spatial single-cell expression dataDongshunyi Li, Jun Ding, Ziv Bar-JosephGenome Research|June 28, 2022
Unsupervised cell functional annotation for single-cell RNA-seqDongshunyi Li, Jun Ding, Ziv Bar-JosephJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 29, 2022
UNIFAN: A Tool for Unsupervised Single-Cell Clustering and AnnotationDongshunyi Li, Jun Ding, Ziv Bar-JosephNature Reviews. Genetics|February 1, 2022
Temporal modelling using single-cell transcriptomicsJun Ding, Nadav Sharon, Ziv Bar-JosephNucleic Acids Research|October 4, 2017
Using neural networks for reducing the dimensions of single-cell RNA-Seq dataChieh Lin, Siddhartha Jain, Hannah Kim, et al.Pageof 385